Usage Guide

This guide provides examples of how to use TrackCell for reading and analyzing spatial transcriptomics data.

Usage Topics:

• Reading SpaceRanger Output
  • Reading Cell Segmentation Data
  • Reading Bin-Level Data (2um/8um/16um)
  • Subsetting Data and Synchronizing Geometries
• Visualization
  • Basic Plotting with Cell Polygons
  • Custom Color Palettes
  • Performance Optimization for Large Datasets
• Computing Distances to a Label
  • Basic Usage
  • Returning Results as DataFrame
  • Visualizing Distances
  • Coordinate Resolution Detection