Installation#

TrackCell can be installed via pip from PyPI.

PyPI Installation#

pip install trackcell -i https://pypi.org/simple

Upgrade to Latest Version#

pip install --upgrade trackcell -i https://pypi.org/simple

Dependencies#

TrackCell requires the following packages:

  • Python >= 3.10

  • scanpy >= 1.9.0

  • geopandas >= 1.1.1

  • pandas >= 2.1.0

  • shapely >= 2.0.0

  • imageio >= 2.31.0

  • numpy >= 1.24.0

  • scipy (for spatial distance calculations)

These dependencies are automatically installed when installing TrackCell via pip.

Development Installation#

To install TrackCell in development mode:

git clone https://github.com/seqyuan/trackcell.git
cd trackcell
pip install -e .